what are you using to do STC? I think by default FSL will move it to the middle slice, but there is probably a way to make take into account the fact that the slices are not uniform over the TR. You should contact the list of the software you are using to get a definative answer. doug
On 03/29/2013 11:37 AM, Meryem Ayse Yucel wrote: > Hi, > > I am running a pASL sequence with a TR = 3 sec and TI2 = 1.8. I am > wondering when I do slice time correction does that move all slices to the > mid of TR that is 1.5 s prior in time or, it moves them to the timing of > the mid slice, which would be the mid of image acquisition aorund 0.6 sec > prior in time with respect to the end of TR. > > Thank you, > > Meryem > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
