Dear Bruce, Thank you for your response. I just looked at the f.nii file using fslview and it looks like the top is cut off.
Trang > what are you visualizing it in? If you just look at it without the registration does it look ok? > On Thu, 4 Apr 2013, > qtngu...@nmr.mgh.harvard.edu wrote: > >> Dear Freesurfer experts, >> After I ran the functional to structural registration using the bbregister >> command, it looks like the dorsal part of the brain for this participant >> is cut off in the BOLD images. When we ran the scan, we made sure that the >> slice prescription covered the entire brain. We also looked at the functional scan in the control room right after the scan and it looked ok. >> We aren't sure what went wrong and why the bold data is cut off. Is there >> any way I can look at the raw dicom files to check if it includes the entire brain? >> Thank you, >> Trang >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
