Marcos, Can you give this version of tkmedit a try on your Fedora 18 system?
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/linux-centos6_x86_64/ you will need to copy tkmedit.bin to your freesurfer/tktools directory (not the freesurfer/bin directory). you may need to type this to make it executable: chmod a+x tkmedit.bin it contains a potential fix to the problem (but i dont have a way to replicate the error to test it). Nick On Mon, 2013-04-15 at 18:02 -0400, Nick Schmansky wrote: > Marcos, > > Thanks for looking into this. We dont have a Fedora 18 system to > replicate the problem on, but we're looking at the section of code > described in bugzilla report. We may need your help to test any fixes > we devise. > > Nick > > > On Mon, 2013-04-15 at 17:59 -0300, Marcos Martins da Silva wrote: > > > > I had several problems testing freesurfer 5.2 installation, as > > previously posted. Now it is all OK and I would like to share what I > > could learn: > > > > 1- It does not work on Fedora 18 (segfaults with all tests with > > tkmedit, tksurfer and recon-all) that is due to a restriction imposed > > by glibc (only newest version). Only freeview works under Fedora 18 > > but, even here, I got a misalignment problem among surfaces and > > volumes. More details at > > https://bugzilla.redhat.com/show_bug.cgi?id=905638 > > 2- I got partial functionality using VirtualBox (4.2.8 and 4.2.10). I > > cannot say about previous versions and the latest one (4.2.12 was > > released on Apriil, 12th). But I had problems with both virtual > > machines I tried: CentOS6 (fresh install) and the Xubuntu + FreeSurfer > > 5.1 vdi file I downloaded from FreeSurfer website. Tkmedit, tksurfer > > and freeview all worked but recon-all failed all time. > > 3- Fedora 17 and CentOS 6 work flawlessly out of box if you do not use > > virtualbox. Probably, other distros will work too, except if they are > > using the latest glibc (2.16-30). So my final setup is a dual boot > > machine: Fedora 18 (day-by-day tasks) and CentOS6 (freesurfer tasks). > > You can do it with only one disk but it is a lot easier with two. > > > > I hope it can help people with similar problems. > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
