Hi Anna what command line did you run? Bruce On Thu, 2 May 2013, Anna Deferia wrote:
Hello FreeSurfer, I have tried adding control points and running recon for the control points multiple times but no changes to the volume are made. Does anyone know what I could be doing wrong? Thank you, Anna On Thu, May 2, 2013 at 2:16 PM, Gonzalo Rojas Costa <gonzalo.rojas.co...@gmail.com> wrote: Hi Bruce: I tested 4.5 and 5.1 versions... with the first I processed complete, and with 5.1 only autorecon1 section... Sincerely, Gonzalo Rojas Costa On Thu, May 2, 2013 at 1:31 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > what version are you running? The newer ones are *much* better at this > Bruce > > On Thu, 2 May 2013, Gonzalo Rojas Costa wrote: > >> Hi: >> >> I has the MPRAGE of a patient with one big ventricle, and the other >> has normal shape and size... Any tip and tricks to process it ?... >> Because freesurfer fails from the beggining of the process (VERY BAD >> talairach registration)... I test -bigventricle option of recon-all, >> but I got the same problems... >> >> Sincerely, >> >> -- >> Gonzalo Rojas Costa >> Laboratory for Advanced Medical Image Processing >> Department of Radiology >> Clínica las Condes >> Lo Fontecilla 441, Las Condes, Santiago, Chile. >> Tel: 56-2-2105170 >> Cel: 56-9-97771785 >> www.clc.cl >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. -- Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.