Hi Jamie, did you look at the help for mri_glmfit? Run it with --help. doug ps. Please post questions to the list so that others can benefit. thanks!
On 05/13/2013 04:12 PM, Jaime Ide wrote: > Dear Douglas, > > Thanks for your helpful page at > https://surfer.nmr.mgh.harvard.edu/fswiki/PairedAnalysis > > I am having problems in the last step running mri_glmfit. > It should be a very simple bug to fix... > *"ERROR: you must use '--surface subject hemi' with surface data"* > (the complete message is at the bottom of this email..) > > I wonder to know if you could help me on this. > Thanks very much in advance, > Jaime > > > ***************************************** > cmdline mri_glmfit --glmdir lh.paired-diff --y > lh.paired-diff.thickness.sm05.mgh --fsgd paired-diff.fsgd --C mean.mtx > sysname Linux > hostname unifesp-monkey3 > machine x86_64 > user jaime > FixVertexAreaFlag = 1 > UseMaskWithSmoothing 1 > OneSampleGroupMean 0 > y /home/jaime/ji_freesurfer/ji_scripts/lh.paired-diff.thickness.sm05.mgh > logyflag 0 > usedti 0 > FSGD paired-diff.fsgd > glmdir lh.paired-diff > IllCondOK 0 > ReScaleX 1 > DoFFx 0 > Creating output directory lh.paired-diff > Loading y from > /home/jaime/ji_freesurfer/ji_scripts/lh.paired-diff.thickness.sm05.mgh > *ERROR: you must use '--surface subject hemi' with surface data* > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
