Hi Matt - Can you source try this on the command line:
source dmrirc_53beta
echo $b0mlist
echo $b0plist
Are these filenames correct, do these files exist? This is how you define
them in your configuration file:
set b0mlist = (`ls ${subjlist}/fmag/MR.* | sort -n | head -1`)
set b0plist = (`ls ${SUBJECTS_DIR}/${subjlist}/fphas/ | sort -n | head -1`)
Thanks,
a.y
On Wed, 15 May 2013, Hoptman, Matthew wrote:
Hi all,
I’m having a problem with tracula. I’m trying to run in version 5.3 beta (is
that
version very different from the newer 5.3?). If I run
trac-preproc -c dmrirc –prep,
I get:
mri_convert /home/hoptman/freesurfer/subjects/c159032/
/home/hoptman/freesurfer/subjects/c159032/dmri/b0mag.nii.gz
mri_convert /home/hoptman/freesurfer/subjects/c159032/
/home/hoptman/freesurfer/subjects/c159032/dmri/b0mag.nii.gz
corRead(): can't open file /home/hoptman/freesurfer/subjects/c159032/COR-.info
I don’t know why it would look for COR-.info in the subjects’ root directory.
I’m
attaching my dmrirc file in case that helps.
Thanks,
Matt
Matthew J. Hoptman, PhD
Research Scientist V
Nathan S. Kline Institute for Psychiatric Research
Research Associate Professor in Psychiatry
NYU School of Medicine
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