Hi Sudhin
this is fixed in more recent versions. We can send you an updated
mris_topo_fixer if you don't want to upgrade everything - just tell us
your hardware/software environment.
cheers
Bruce
On Thu, 23 May 2013, Sudhin A. Shah
wrote:
1) BEST FITNESS (M) is 984.24263
mri =0.000 curv = 4.318 unmri = -1001.515
( f=0.00 , v=0.00 , c=4.32 , q= 8.64 )
( f=0.00 , v=0.00 , c=4.32 , q= 8.64 )
63 patches have been generated - 38 self-intersected
max face = 36973(40653) - loop = 46 (73) - ntries = [27,14799]
ERROR: _FindFacePath: could not find path!
Linux sudhin-Precision-WorkStation-690 2.6.35-32-generic #67-Ubuntu SMP Mon
Mar 5 19:39:49 UTC 2012 x86_64 GNU/Linux
recon-all -s xtyzW exited with ERRORS at Tue May 21 05:48:38 EDT 2013
===============
2)*************************WATERSHED**************************
Sorting...
mri_watershed Error:
Problem in the COG calculation:
T1.mgz may not contain properly normalized white-matter.
Confirm that T1.mgz has enough white-matter voxels of value 110.
If white-matter contains few if any voxels of value 110,
try adding wm control-points to nu.mgz, and re-run recon-all.
Linux sudhin-Precision-WorkStation-690 2.6.35-32-generic #67-Ubuntu SMP Mon
Mar 5 19:39:49 UTC 2012 x86_64 GNU/Linux
recon-all -s cbvfB exited with ERRORS at Fri May 17 17:45:23 EDT 2013
==============
3)CORRECTING DEFECT 2 (vertices=30163, convex hull=6211)
error in the retessellation
normal vector of length zero at vertex 88778 with 0 faces
vertex 88778 has 0 face
No such file or directory
Linux sudhin-Precision-WorkStation-690 2.6.35-32-generic #67-Ubuntu SMP Mon
Mar 5 19:39:49 UTC 2012 x86_64 GNU/Linux
recon-all -s ghjG exited with ERRORS at Thu May 16 05:11:49 EDT 2013
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
