Dear Freesurfer Experts, I have been running freesurfer 5.3 without any reported errors using the following command:
recon-all -i SPGR/*.gz -s SUBJECTIDENTIFIER -nuintensitycor-3T -nocanorm -openmp 50 -hippo-subfields -all However, when I look for any of the hippocampal subfield stats (as described on http://ftp.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldSegmentation), I do not find any of them. Any suggestions on what I am doing incorrectly? Best wishes, Salil Soman, MD, MS
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