What do you get when you run "echo $SUBJECTS_DIR"?
On Thu, 6 Jun 2013, std...@virgilio.it wrote:
Hi Anastasia, yes, I have check the SUBJECTS_DIR. I do not understand why all previous configuration file start normally and this no. Do you note some line that might be wrong additionally to setenv SUBJECTS_DIR line. Stefano ----Messaggio originale---- Da: ayend...@nmr.mgh.harvard.edu Data: 5-giu-2013 16.09 A: <std...@virgilio.it> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: Tracula Is the "setenv SUBJECTS_DIR" line really commented out? You must set SUBJECTS_DIR, see the example configuration file on the wiki and under $FREESURFER_HOME/bin/dmrirc.example. On Wed, 5 Jun 2013, std...@virgilio.it wrote: > Hi list and Anastasia, > I'm performing a set of data with tracula version 3.0. I have change my > dmrirc file respect to previous analyses and now I have one problem > > "set: Variable name must begin with a letter. > ERROR: must specify as many DWI dicoms as subjects". > > I do not find the line that is wrong. I think to have approximately used the > same lines of previous and correct analysis. > > I have attached the configuration file. Note that I'm using nii.gz. > > Thanks and best regards. > > > Stefano > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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