Hi Joshua The thickness isn't well defined in the hippocampus, so you don't want to use it there. Use volumes of the subfields instead Cheers Bruce
On Jun 12, 2013, at 10:35 PM, Joshua deSouza <desouzajoshu...@gmail.com> wrote: > Hello Bruce, > > Yes, I am using the surfaces for this. I am trying to find cortical thickness > differences between populations. I do not think that the mask covers the > entire hippocampal area, just leaving out the corpus callosum. How would I > include these areas into the mask? > > Thank you, > > Joshua > > On Tue, Jun 11, 2013 at 8:29 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > Hi Joshua > > are you using the surfaces for this? If so, you shouldn't as they are > undefined in those regions (since they have internal laminar structure that > is different than what we expect). What are you trying to achieve? > > cheers > Bruce > > On Tue, 11 Jun 2013, Joshua deSouza wrote: > > Hello all, > > I am having a problem with generating values of the vertices at the > hippocampal area. I believe it is a masking issue as reviewing the mask > after the glmfit analysis I see that the mask does not cover the entire > medial region excluding the corpus callosum. Can I do anything to change the > mask as to add deeper brain regions at the hippocampal area? > > Thank you > > Joshua > > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
