Hi Mark
how did you install? There's no reason that the subjects dir should be
executable, so the last command is correct. There's nothing we do that
should mess with your paths to things like wc and grep. You should have
just sourced our setup script in your .cshrc or the init file of whatever
shell you are using
Bruce
On Fri, 14 Jun 2013, Mark Plantz wrote:
Hello,
I recently installed FreeSurfer on an OS x machine. After finishing the
process, I received the following output:
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer
FSFAST_HOME /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/subjects
grep: Command not found.
wc: Command not found.
grep: Command not found.
wc: Command not found.
grep: Command not found.
wc: Command not found.
MNI_DIR /Applications/freesurfer/mni
/usr/local/fsl/etc/fslconf/fslmachtype.sh: line 14: uname: command not found
FSL_DIR /usr/local/fsl
/usr/local/Applications/freesurfer: No such file or directory.
Why can the grep, wc, of MNI commands not be found?
Also, when I type the command:
$FREESURFER_HOME/subjects
I receive the following error:
/Applications/freesurfer/subjects: Permission denied.
Any ideas on how to solve this problem? Is it a licensing issue? I have
already created the .license file.
Best,
Mark Plantz
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