Hello, I recently installed FreeSurfer on an OS x machine. After finishing the process, I received the following output:
*Setting up environment for FreeSurfer/FS-FAST (and FSL)* *FREESURFER_HOME /Applications/freesurfer* *FSFAST_HOME /Applications/freesurfer/fsfast* *FSF_OUTPUT_FORMAT nii.gz* *SUBJECTS_DIR /Applications/freesurfer/subjects* *grep: Command not found.* *wc: Command not found.* *grep: Command not found.* *wc: Command not found.* *grep: Command not found.* *wc: Command not found.* *MNI_DIR /Applications/freesurfer/mni* */usr/local/fsl/etc/fslconf/fslmachtype.sh: line 14: uname: command not found* *FSL_DIR /usr/local/fsl* */usr/local/Applications/freesurfer: No such file or directory.* Why can the grep, wc, of MNI commands not be found? Also, when I type the command: *$FREESURFER_HOME/subjects* I receive the following error: /Applications/freesurfer/subjects: Permission denied. Any ideas on how to solve this problem? Is it a licensing issue? I have already created the .license file. Best, Mark Plantz
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