Hi Jane
that means it is trying to correct the topology of a very large defect.
46K vertices is about 1/3 of a normal human hemisphere. Check the
?h.orig.nofix and see if something big has gone wrong - the skull being
attached or the cerebellum or something like that. I don't have much
experience with NHP data, so hopefully someone else on the list can chime
in.
cheers
Bruce
On Tue, 18 Jun 2013, Jane Qu wrote:
Hi freesurfers!
I am new to freesurfer and have encountered a problem with surface generation.
I am working with a non-human primate
anatomical volume. I finished segmenting the white matter and am on this next
step. I think, however, that the step where
the surface is generated from wm.mgz is crashing (I started the process last
night and it has not finished and does not
appear to be moving forward). Does anybody know why this might be happening?
How long should I expect this step to take? I
have attached below some of the messages I'm receiving.
Thanks in advance!
Jane
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