Hi Louis, When I try mri_surf2surf, I get the error ERROR: could not determine type of Yeo2011_7Networks_N1000.annot
Could it be because this is an annotation file, and not a surface such as ?h.curv, ?h.thickness etc? I guess I need something like "mri_annot2annot", does anything like this exist? I tried using mri_annotation2label, mri_label2label and then mri_label2annot, but that's quite complicated and didn't work. Thanks, Peter On 06/17/2013 03:00 PM, Louis Nicholas Vinke wrote: > Hi Peter, > mri_surf2surf is what you want to use for this. > -Louis > > On Mon, 17 Jun 2013, Peter Savadjiev wrote: > >> Hello, >> >> I have an annotation file for fsaverage, which I would like to map it to >> a particular subject. What would be the best way to do so? >> >> I tried a combination of calls to mris_ca_train and mris_ca_label, but >> the latter gave me an error. >> >> First I ran >> >> mris_ca_train lh lh.sphere.reg fsaverage/label/<file>.annot fsaverage >> /tmp/<output>.gcs >> (where<file> and<output> are some file names) >> >> and that executed without any problems. >> >> Then I ran >> >> mris_ca_label<subject_id> lh lh.sphere.reg /tmp/<output>.gcs >> ./lh.<newfile>.annot >> (here<subject_id> is some subjects' name, and<output> and<newfile> >> are some names) >> >> and I got the error: >> could not open translation file >> $FREESURFER_HOME/Simple_surface_labels2002.txt >> >> Maybe there is a simpler way to perform this task? Or maybe an easy way >> to fix this error? Any help will be much appreciated. >> >> Thank you, >> >> Peter >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
