Try
mri_convert file.nii --out_orientation LAS file2.nii
doug
On 6/20/13 5:30 AM, Brigitte Dahmen wrote:
Dear Doug, dear freesurfers,
thank you very much! If I'd like to change the orientation (from PSR
to LAS), is there a way in Freesurfer to do it?
Thanks again!
Best,
Brigitte
2013/6/20 Douglas Greve <gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>
If you just want to check the orientation, then you can run
mri_info. It will not tell you whether the orientation is correct
or not, but neither will fslhd
doug
On 6/19/13 11:18 AM, Bruce Fischl wrote:
Hi Brigette,
not sure how you could do this except visually. Bring the images
up and verify that the directions that we specify are correct
(although of course this isn't possible for L/R unless you have
some type of external fiducial marker like a vitamin E tablet)
cheers
Bruce
On Wed, 19 Jun 2013, Brigitte Dahmen wrote:
Dear Freesurfer experts,
is there a command in Freesurfer to check for correct
orientation (LAS vs.
PSR) of T1 images (similar to "fslhd" in FSL)?
Thank you very much!
Brigitte
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