Hi Lilla, thanks for the advice, I'll just upgrade my RAM to 24 GB (maybe it will help FSFAST too ;-)). I used the --m3d flag as a blind guess about the possible cause of the aforementioned error, thank you for clearing that up, I'll skip it next time.
Best regards, Marcel 2013/7/9 Lilla Zollei <lzol...@nmr.mgh.harvard.edu> > > Hi Marcel, You would ned at least twice as much. Also, is there a specific > reason for you to use the --m3d flag? That will result in writing out > uncompressed morph files which will take up a lot of space. > Lilla > > > On Tue, 9 Jul 2013, Marcel Falkiewicz wrote: > > Dear FreeSurfers, >> I'm trying to use mri_cvs_register, however the process can't complete >> and I get the following error: >> [...] >> loading transform id string = >> data size = 18728074 >> uilen = 6 >> loading transform id string = >> data size = 19845421 >> uilen = 6 >> loading transform id string = >> data size = 19120776 >> uilen = 6 >> loading transform id string = >> data size = 71 >> uilen = 7 >> loading transform id string = >> saveTransform code >> writing transform size = 117019458 >> saveTransform code >> writing transform size = 117019458 >> saveTransform code >> writing transform size = 16 >> saveTransform code >> writing transform size = 21339696 >> saveTransform code >> writing transform size = 21092930 >> saveTransform code >> writing transform size = 20795616 >> saveTransform code >> writing transform size = 20591898 >> saveTransform code >> requested buffer size = 436643894 >> Exception caught while saving morph >> ZlibStringCompressor::**setBufferSize - Caught std::bad_alloc >> >> My command line was: mri_cvs_register --mov subject01 --mni --openmp 8 >> --m3d >> >> At the time of crash all RAM is consumed by createMorph process (10 GB). >> Is this crash related to the ammount of RAM on my machine (12 GB)? If so, >> how much RAM is needed to complete mri_cvs_register? >> >> Best regards, >> Marcel >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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