Hi Rebecca, this is intentional. The whole brain is divided up into left
cortical hemi, right hemi, and subcortical structures. the MNI305 is
only supposed to handle the subcortical structures. If you want a brain
volume with cortical and subcortical, you can use vlrmerge to merge the
volume, lh, and rh into one volume. Alternatvely, you can run
preproc-sess with the -no-subcort-mask and it will not mask the mni305
results
doug
On 7/10/13 10:26 PM, Lijia Wang wrote:
Hi experts,
When I'm pre-processing the 4D whole brain BOLD images using
"preproc-sess -sf -mni305 -fwhm 5 -fsd bold -per-run" , the results of
registration from BOLD images to the MNI305 template are always only a
small part of the original images. I tried to use another T1_152
template instead(higher resolution) of the original MNI305 template,
then"recon-all", "preproc-sess", but the results still remain the
small part. How can I solve this problem?
Thanks!
Best Regards!
Rebecca
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