Dear Bruce and Doug, Thank you very much!
PS: I searched through my data folder and didn't find T2 images. There goes all my afternoon! Ye On Thu, Jul 11, 2013 at 1:29 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > the fix is to acquire a FLAIR or T2 image. What you are seing is the > tentorium of the cerebellum which is very difficult to distinguish from > cortical gray matter on a T1-weighted image. If you don't have either of > those datasets you probably will need to do manual editing Bruce > > > On Thu, 11 Jul 2013, ye tian wrote: > > Sorry! >> The attachments are really showing the same structure, but in different >> views. I have at least a hundred slices which include it. Since the pial >> surface is not extending into cerebellum, should I just edit >> brainmask.mgz? >> >> Is there a quicker fix to the problem than manual editing? >> >> Thank you very much! >> >> Sincerely, >> Ye >> >> >> On Thu, Jul 11, 2013 at 12:30 PM, Douglas N Greve >> <gr...@nmr.mgh.harvard.edu> wrote: >> what do you mean by the structure in the circle? The circles are >> pretty big and have a lot of WM and GM in them. >> >> On 07/11/2013 12:55 PM, ye tian wrote: >> Dear Doug, >> >> Thank you very much! >> >> Are you basically saying that the structure in the circle >> is not part of the cortex? >> >> Sincerely, >> Ye >> >> >> On Thu, Jul 11, 2013 at 11:01 AM, Douglas N Greve >> <gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.**edu<gr...@nmr.mgh.harvard.edu> >> >> >> wrote: >> >> yes >> On 07/11/2013 11:22 AM, ye tian wrote: >> > Dear Freesurfers, >> > >> > Do you think I should delete the extra dura-like structure >> in the >> > attached case? >> > >> > Thank you very much! >> > >> > Sincerely, >> > Ye >> > >> > >> > ______________________________**_________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> <mailto:freesur...@nmr.mgh.**harvard.edu<Freesurfer@nmr.mgh.harvard.edu> >> > >> > >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> <mailto:gr...@nmr.mgh.harvard.**edu<gr...@nmr.mgh.harvard.edu> >> > >> Phone Number: 617-724-2358 <tel:617-724-2358> >> Fax: 617-726-7422 <tel:617-726-7422> >> >> Bugs: >> surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> >> <http://surfer.nmr.mgh.**harvard.edu/fswiki/**BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> > >> FileDrop: >> https://gate.nmr.mgh.harvard.**edu/filedrop2<https://gate.nmr.mgh.harvard.edu/filedrop2> >> >> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> >> <http://www.nmr.mgh.harvard.**edu/facility/filedrop/index.**html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> > >> Outgoing: >> >> ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/**greve/<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> <mailto:freesur...@nmr.mgh.**harvard.edu <Freesurfer@nmr.mgh.harvard.edu> >> > >> >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the >> person to >> whom it is >> addressed. If you believe this e-mail was sent to you in >> error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was >> sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: >> surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> FileDrop: >> https://gate.nmr.mgh.harvard.**edu/filedrop2<https://gate.nmr.mgh.harvard.edu/filedrop2> >> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> Outgoing: >> ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/**greve/<ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> >> >> >> >>
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