Hi Qasim, we don't really support non-human applications. Some people 
have made modification to do monkey, but I've never seen anyone attempt 
mouse or rat. Once you get to a point where you have surfaces, then 
doing the surface registration would not be hard.
doug


On 07/15/2013 10:54 AM, Qasim Bukhari wrote:
> Dear all,
> I attended the Seattle course a couple of weeks ago. Actually I m 
> using mice data in my analysis, and I was wondering if I can use 
> freesurfer for that as well ?
> I understand there is not so much sulci and gyria problem in mice data 
> as in human, however a flattened surface registration and analysis 
> might still be interesting to see. Is it possible at all to do that ?
>
> Thanks a lot and best,
> Qasim
>
> Qasim Bukhari
>
> Research Assistant and Doctoral Candidate
>
> Institute for Biomedical Engineering
>
> ETH and University Zurich
>
> Wolfgang-Pauli-Strasse 27, HIT E22
>
> webpages: MR-page <http://www.mr.ethz.ch/ibt/?name=sbukhari>
>
> http://www.biomed.ee.ethz.ch/people/sybukhar
>
>
>
>
>
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MGH-NMR Center
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