Thanks Doug, that looks great! In addition, is the specific fsaverage brain in the MNI space?
Panos ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, July 22, 2013 12:24 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Skull stripped MNI305 Try $SUBJECTS_DIR/fsaverage/mri/brain.mgz doug On 07/19/2013 03:06 PM, Fotiadis, Panagiotis wrote: > Hi, > > I was wondering if there is a skull stripped version of the file > /usr/local/freesurfer/stable5_0_0/average/mni305.cor.mgz stored anywhere. I > tried applying bet and mri_watershed on the mni305.cor.mgz file (with > different frequencies as well) but there were still parts of the skull > showing. > Thank you for your time! > > Panos > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
