Hi Mark, I have no idea what you are doing. Can you send a command line? Are either of the images generated by FS? doug
On 07/22/2013 03:56 PM, Mark Plantz wrote: > Hello FreeSurfers, > > I recently obtained a set of infant templates. Out of curiousity, > I decided to view one of the input brains with the provided segmented > volume file. It appears that there is some misalignment. I wouldn't > expect the alignment to be perfect, since I am basically overlaying an > average of multiple brains onto one. However, it looks like this > misalignment may be caused by either: 1.) the segmentation volume file > being shifted down or 2.) the slices not lining up properly (i.e. one > file starts before the other). > > Any ideas what could cause a problem like this? Could it be that > the segmented files are simply not compatible with FreeSurfer? > > Thanks for the help, > > Mark > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.