That won't work. If you are going to use anat2std.register.dat, then you
will need to specify the individual subject instead of fsaverage. For
fsaverage, use $FREESURFER_HOME/average/mni152.register.dat
doug
On 8/1/13 7:11 PM, Yang, Daniel wrote:
Hi FreeSurfer Expert,
So GFEAT results are in MNI152 standard space. Is there a way I can
visualize the GFEAT results on a fsaverage surface?
For example, if I do the following, would that be okay?
tksurferfsaverage lh inflated -annot aparc.annot \
-ov fbert.gfeat/cope1.feat/stats/zstat1.nii.gz \
-ovreg fbert1.feat/reg/freesurfer/anat2std.register.dat \
-fthresh 2.3 -fmid 3.3 -fslope 1
Thanks!
Daniel
--
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454
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