Hi Joe try adding -all to the end. You need to specify a directive for it to carry out
cheers Bruce On Mon, 5 Aug 2013, Joseph Andreano wrote: > Hi All, > > I'm trying to use recon-all on some structural data, and when I drop the > command (specifically, recon-all -i > /cluster/iaslab/SPAR/mri/recon/3danat/003/001.mgz -subjid > SPAR_016_130708), I get this error message: > > ERROR: You are trying to re-run an existing subject with (possibly) new > input data (-i). If this is truly new input data, you should delete the > subject folder and re-run, or specify a different subject name. If you > are continuing an analysis of an existing subject, then omit all -i flags. > > I have tried all the options suggested in the error message, and none > work. I can't delete the subject folder, because no such folder exists. > I tried running the command with a different subject name, and although > the command appeared to complete without error, no folder with the new > name was created, and no files were generated. I tried removing the -i > flags, and I got this: ERROR: nothing to do. > > Any suggestions? > > Thanks, > Joe Andreano > > > _________________________________ > > Joseph M. Andreano, PhD > Postdoctoral Researcher > Interdisciplinary Affective > Science Laboratory > Massachusetts General Hospital > _________________________________ > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
