Use --annotation aparc.a2009s Run it with --help to see all the options. doug
On 08/06/2013 08:24 AM, Linn Mittlestein wrote: > Hi all, > > I bit confused about how to create labels from annotation2label > command to create DLPFC. I want make DLPFC label by merging > G_frontal_middle.label, S_frontal_inferior.label and > S_frontal_middle.label (available in the 2009 atlas). But I only can > get annotation2label to work with the other atlas; eg using this command: > > mri_annotation2label --subject $subject --hemi rh --outdir > ./$subject/label > > But I would like 2009 atlas so for example > > mri_annotation2label --a2009s --subject $subject --hemi rh --outdir > ./subject/label > > But this flag doesnt seem to work. Any other suggestions to get the > label files (so i can then do mri_mergelabels and Mris_anatomical > stats would be very appreciated, I dont think I need use tksurfer, I > think mri_annotation2label should work somehow? > > Kind Wishes, > > Linn > > > / > > / > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
