Can you please attach the file Forceps_Major_CC.list.txt?
On Thu, 15 Aug 2013, Alan Francis wrote:
Hi Anastasia:
Yes the '/' is really there before the autofs. It is puzzling.
thanks,
Alan
On Thu, Aug 15, 2013 at 3:15 PM, Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu> wrote:
I didn't suggest taking it off, I meant make sure that the '/'
is there, because the error message suggested to me that a '/'
was missing from a filename listed IN that text file. Check your
original error message.
On Thu, 15 Aug 2013, Alan Francis wrote:
Hi Anastasia:
I took off the '/' before the autofs, but then it gave me
a different
problem.
csh::alanf@cerebro[/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5
.3_Data/diffusion_
recons] :
tractstats2table--load-pathstats-from-fileautofs/space/dali_003/users/BW_project_DTI/FreeSu
rfer_5.3_Data/diffusion_re
cons/Forceps_Major_CC.list.txt
--overall--tablefileautofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/d
iffusion_re
cons/Forceps_Major_CC.All.table
ERROR:
thefileautofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/diffusio
n_re
cons/Forceps_Major_CC.list.txt doesnt exist
Actually it does exist.
thanks,
Alan
On Thu, Aug 15, 2013 at 2:40 PM, Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu> wrote:
Is it really autofs without the '/' in front?
On Thu, 15 Aug 2013, Alan Francis wrote:
Hi Anastasia:
Sorry to bother you again. I am trying to extract trac
stats from the FS
data. When I run the following script, it gives me an
error message:
csh::alanf@cerebro[/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5
.3_Data/diffusion_
recons]
:tractstats2table--load-pathstats-from-file/autofs/space/dali_003/users/BW_p
roject_DTI/FreeS
urfer_5.3_Data/diffusion_r
econs/Forceps_Major_CC.list.txt--overall--tablefile/autofs/space/dali_003/users/BW_project_DTI/FreeSurfer_
5.3_Data/
diffusion_r
econs/Forceps_Major_CC.All.table
Parsing the .stats files
ERROR:
Thestatsfileautofs/space/dali_003/users/BW_project_DTI/FreeSurfer_5.3_Data/dif
fusio
n_re
cons/BW_101/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt
is not found
or is too small to be a valid statsfile
However, when I manually checked the pathstats.overall.txt, the
data is
physically there. Am I doing something wrong?
thanks so much,
Alan
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