Hi Francesco - The bedpostx files are created when you run trac-all -bedp.
Then you need to run trac-all -path to reconstruct the paths under
dpath/... as the final step. Did you run this?
a.y
On Mon, 19 Aug 2013, Francesco Siciliano wrote:
Thank you!
Is it normal, however, not to have a dpath folder with summary statistics? I
have all of the bedpostx output files, however, I seem to be missing the dpath
folder as well as a script confirming that -path was completed.
Thanks,
Francesco
________________________________________
From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
Sent: Monday, August 19, 2013 1:56 PM
To: Francesco Siciliano
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] [Tracula] error running trac-all –path –c
Configuration_file.txt
Hi Francesco - There's a list of bedpostx output files here:
http://fsl.fmrib.ox.ac.uk/fsl/fsl4.0/fdt/fdt_bedpostx.html
The best way to determine if bedpostx finished running properly is to
check if those files were created in the dmri.bedpostX directory.
a.y
On Mon, 19 Aug 2013, Francesco Siciliano wrote:
Hello,
I received an error on several terminals running trac-all –path –c
Configuration_file.txt
55 slices processed
56 slices processed
56 slices processed
57 slices processed
57 slices processed
58 slices processed
59 slices processed
60 slices processed
61 slices processed
Queuing post processing stage
70 slices processed
For some reason the bedpostX process DOES NOT appear
to have successfully completed. Please examine your
results carefully.
/Users/jonathanposner/Desktop/MRI_Software/FSL_installer/fsl/bin/bedpostx: line
262: kill: (15849) - No such process
Is this an indication that the processing did not finish? Could this have
anything to do with limited computer
memory?
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