Use "--sval-area white" not "--sval-area area" if you want the area of the white surface doug
On 09/03/2013 12:26 PM, fatma zribi wrote: > > > ---------- Forwarded message ---------- > From: *fatma zribi* <zribi.fa...@gmail.com <mailto:zribi.fa...@gmail.com>> > Date: 2013/9/3 > Subject: How to smoothing area with mri_surf2surf? > To: Bruce Fischl <fis...@nmr.mgh.harvard.edu > <mailto:fis...@nmr.mgh.harvard.edu>> > > > Dear Bruce, > > Would you mind help me. I would like to smooth area surface with the > command mri_surf2surf. > > I have done this instruction: > > mri_surf2surf --hemi lh --s s089_open_brain_sanlm_+TIR_normlalized > --sval-area area --fwhm 15 --trgsubject avg_surfacique_all_database_SD > --tval lh.area.15.mgh --cortex > srcsubject = s089_open_brain_sanlm_+TIR_normlalized > srcval = (null) > srctype = > trgsubject = avg_surfacique_all_database_SD > trgval = lh.area.15.mgh > trgtype = > srcsurfreg = sphere.reg > trgsurfreg = sphere.reg > srchemi = lh > trghemi = lh > frame = 0 > fwhm-in = 0 > fwhm-out = 15 > label-src = (null) > label-trg = lh.cortex.label > OKToRevFaceOrder = 1 > Reading source surface reg > /Copie5/s089_open_brain_sanlm_+TIR_normlalized/surf/lh.sphere.reg > Loading source data > Reading surface file > /Copie5/s089_open_brain_sanlm_+TIR_normlalized/surf/lh.area > nquads=4718596, nvertices=513 > ERROR: MRISread: file > '/Copie5/s089_open_brain_sanlm_+TIR_normlalized/surf/lh.area' has many > more faces than vertices! > Probably trying to use a scalar data file as a surface! > > No such file or directory. > > With best regards, > > Fatma > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
