Hi Victor
have you tried running with the -bigventricles flag?
cheers
Bruce
On Tue, 17 Sep 2013,
Victor Kovac wrote:
Dear FreeSurfer experts,
There are a number of patients in my study with significant ventricular
dilation, which is causing problems with segmentation of the ventricles and
corpus callosum, in particular, after recon-all (image attached). I am using
v5.3.
I manually adjusted the talairach, but this did not fix the issue. Is there
anything else I can try? It is very important that I get at least some
volumetric data from these patients, as they are suffering from the worst
neurologic disease.
I appreciate any advice you can provide.
Thanks,
Victor
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