Try mri_annotation2label.
On Wed, 25 Sep 2013, std...@virgilio.it wrote:
For FSL guide: I should transforms a group of labels into a surface Usage: label2surf -s <surface> -o <outputsurface> -l <labels> Compulsory arguments (You MUST set one or more of): -s,--surf input surface -o,--out output surface -l,--labels ascii list of label files Optional arguments (You may optionally specify one or more of): -v,--verbose switch on diagnostic messages -h,--help display this message but I should create a lh/rh.frontal.label and use it for label2surf. With mdi_binarize I can create .nii.gz but no .label. Is that correct? How I can do it? Thanks, Stefano ----Messaggio originale---- Da: ayend...@nmr.mgh.harvard.edu Data: 25-set-2013 17.49 A: <std...@virgilio.it> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] Import FS data to FSL 1 - Yes. 2 - You can use mri_aparc2aseg to grow the cortical labels into the white matter (say, by 2mm). The file that it will produce will be a volume file, so then you just run mri_binarize to extract specific labels. Make sure you save them in nifti format for FSL. On Wed, 25 Sep 2013, std...@virgilio.it wrote: > Hi list, > > I have 2 questions, please. > > 1-The bedpostX that I have run for TRACULA could be used for PROBTRACKX > (FSL)? > > 2-I'd like to export cortical masks from FS to FSL. > > An option is mri_binarize but this way failed in probtrackx (fsl). > FSL list have advised me that I should use label2surf command to convert > label to surface files. > > Where could find the .label (according to FreeSurferColorLUT.txt) to build > mask of frontal, parietal, motor, sensor, temporal and occipital lobes? > > Do you have other ways that you advise me? > > > Thanks, > > > Stefano > > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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