I still receive the same error message (1mm is now 2mm in the message).
outanadir =
/autofs/cluster/tootell/pitcairn/1/shahin/Retina_Prj/Sbj_53/abir/bold/RetinaPrj_nomask2
Error using MRIread (line 76)
ERROR: cannot determine format of
/autofs/cluster/tootell/pitcairn/1/shahin/Retina_Prj/Sbj_53/abir/bold/008/masks/.mni305.2mm
(MRIread)
Error in fast_selxavg3 (line 146)
runmask = MRIread(flac.maskfspec);
> Does the same thing happen if you use the 2mm instead of the 1mm?
>
> On 10/02/2013 02:21 PM, SHAHIN NASR wrote:
>> Hi,
>> I want to test activity outside the brain (around eyes/retina) but
>> when I use "-no-mask" flag in my mkanalysis-sess (to be able to see
>> activity outside brain) as below:
>>
>> mkanalysis-sess -analysis RetinaPrj_nomask -fwhm 2 -paradigm
>> Conds.par -mni305 1 -event-related -polyfit 2 -gammafit 2.25 1.25
>> -mcextreg -TR 2.000 -nconditions 3 -refeventdur 14 -force -runlistfile
>> RunList -per-run -fsd bold -no-mask
>>
>> I get this error:
>>
>> outanadir =
>> /autofs/cluster/tootell/pitcairn/1/shahin/Retina_Prj/Sbj_53/abir/bold/RetinaPrj_nomask
>> Error using MRIread (line 76)
>> ERROR: cannot determine format of
>> /autofs/cluster/tootell/pitcairn/1/shahin/Retina_Prj/Sbj_53/abir/bold/008/masks/.mni305.1mm
>> (MRIread)
>>
>>
>> Error in fast_selxavg3 (line 146)
>> runmask = MRIread(flac.maskfspec);
>> >> ------------------------------------------
>> ERROR: fast_selxavg3() failed\n
>>
>> Note:
>> ** I have already used -nomask and -no-subcort-mask in the preproc-sess
>> *** If I remove this flag, everything looks fine except for the fact
>> that all activity outside brain is masked!
>>
>>
>> --
>> Shahin Nasr
>>
>> PhD in Cognitive Neuroscience
>> Martinos Imaging Center, MGH
>> Harvard Medical School
>>
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
>
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
