Hi Tara,
Brilliant, that's exactly what I need. For some reason I was under the
impression that the --parc flag was restricted to either the Killiany/Desikan
atlas or the Destrieux atlas. Thanks again!
Jack
On 2013-10-03, at 2:03 PM, Tara Ann Miskovich <misko...@uwm.edu>
wrote:
> Hi Jack,
>
> You can specify the .stats file created. Here is an example from the script I
> use.
>
> Anyone, correct me if this is wrong!
>
> Tara
>
> mris_anatomical_stats -l ${subject}/label/lh.frontalmerge.label -f
> ${subject}/stats/lh_frontal_surface.stats ${subject} lh pial
>
> aparcstats2table --hemi lh \
> --subjects sub1 sub2 sub3 \
> --meas thickness \
> --parc lh_frontal_surface \
> --tablefile lh.frontal_thickness.stats.txt
>
>
> ----- Original Message -----
> From: "Jackie Lam" <jackie....@mail.mcgill.ca>
> To: freesurfer@nmr.mgh.harvard.edu
> Sent: Thursday, October 3, 2013 12:51:21 PM
> Subject: [Freesurfer] aparcstats2table for manually drawn ROIs
>
> Hi there,
>
> So I've run recon-all on my group of subjects, ran them in QDEC, manually
> drawn my ROIs, used mris_anatomical_stats to create a .stats files for each
> subject from my hand drawn ROIs and now I want to use aparcstats2table to
> gather the thicknesses from all my subjects.... Is there an option to gather
> stats from a particular .stats file rather than from just the two
> parcellation atlases? I think there is something similar in asegstats2table
> (--stats=lh.xxx.stats), but is there something like that for aparcstats2table?
>
> Many thanks,
>
> Jack
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
