Doug, I'd like to get them into the individual's space, but I assume I have to get there by way of fsaverage? Final goal is to have a regional thickness measure for each individual subject. Ruth Carper
________________________________ From: "freesurfer-requ...@nmr.mgh.harvard.edu" <freesurfer-requ...@nmr.mgh.harvard.edu> To: freesurfer@nmr.mgh.harvard.edu Sent: Saturday, October 5, 2013 9:00 AM Subject: Freesurfer Digest, Vol 116, Issue 14 ---------------------------------------------------------------------- Message: 1 Date: Fri, 04 Oct 2013 12:21:32 -0400 From: Douglas N Greve <gr...@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] FSL masks applied to Freesurfer surfaces? To: freesurfer@nmr.mgh.harvard.edu Message-ID: <524eeb0c.8050...@nmr.mgh.harvard.edu> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Do you want to transfer them to fsaverage space or to the individual anatomical space? doug On 10/04/2013 01:42 AM, Ruth Carper wrote: > Hi, > I'd like to take some masks that I have in MNI standard space in FSL > and map them to Freesurfer surface space. The goal is to extract > measures of average cortical thickness (or area or etc) for those > regions for each subject. Is there a standard way to do this? > > >
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