Hi Laura, So the 'freesurfer' command works but all other other freesurfer commands (e.g. tkmedit, freeview) return "Command not found."?
Can you please provide me with the out of the 'echo $PATH' command? Thanks. -Zeke On 10/21/2013 12:34 PM, Laura Taylor wrote: > Hi, > > I have just downloaded and I thought installed freesurfer on a Debian > system (Debian 3.2.51-1 x86_64 GNU/Linux). However when I go to test the > install by typing in freeview (or any other command) in the terminal > window I get the following: > > % freeview > freeview: Command not found. > > Before doing this, I added my license key to a .license file in the > freesurfer directory. > I had also previously set up the environment as follows: > > > % setenv FREESURFER_HOME /Data/freesurfer > % source $FREESURFER_HOME/SetUpFreeSurfer.csh > -------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /Data/freesurfer > FSFAST_HOME /Data/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /Data/freesurfer/subjects > MNI_DIR /Data/freesurfer/mni > > When I type freesurfer in the terminal window I am told that: > > You are running this version of FreeSurfer: > > freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 > > > _____ > Can you help me figure out why I can't get freesurfer to run?? I have > previously been able to install and use freesurfer on a different > computer running Unbuntu. > > Many Thanks, > > Laura > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
