Dear Anastasia, I tried the command you suggested me and i obtained the output I attach to the mail. I would like to ask you if I understood well shot it means. In this case left uncinatus connects the following cortex areas: ctx-lh-fusiform ctx-lh-inferiortemporal ctx-lh-lateralorbitofrontal ctx-lh-medialorbitofrontal ctx-lh-middletemporal ctx-lh-rostralanteriorcingulate ctx-lh-superiortemporal ctx-lh-temporalpole ctx-lh-insula and for each area I have the volume of the path. Is it correct? Thanks Lucia |
# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ # cmdline mri_segstats --seg dlabel/diff/aparc+aseg.bbr.nii.gz --ctab /Applications/freesurfer/FreeSurferColorLUT.txt --excludeid 0 --sum leftunc.txt --i dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz # sysname Darwin # hostname Lucia-MAC.area.pi.cnr.it. # machine x86_64 # user luciabilleci # anatomy_type volume # # SegVolFile dlabel/diff/aparc+aseg.bbr.nii.gz # SegVolFileTimeStamp 2013/10/03 10:24:56 # ColorTable /Applications/freesurfer/FreeSurferColorLUT.txt # ColorTableTimeStamp 2013/05/14 16:36:03 # InVolFile dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz # InVolFileTimeStamp 2013/10/03 14:40:09 # InVolFrame 0 # ExcludeSegId 0 # Only reporting non-empty segmentations # VoxelVolume_mm3 27 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader Mean # TableCol 6 FieldName Intensity Mean # TableCol 6 Units unknown # TableCol 7 ColHeader StdDev # TableCol 7 FieldName Itensity StdDev # TableCol 7 Units unknown # TableCol 8 ColHeader Min # TableCol 8 FieldName Intensity Min # TableCol 8 Units unknown # TableCol 9 ColHeader Max # TableCol 9 FieldName Intensity Max # TableCol 9 Units unknown # TableCol 10 ColHeader Range # TableCol 10 FieldName Intensity Range # TableCol 10 Units unknown # NRows 110 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName Mean StdDev Min Max Range 1 2 7198 194346.0 Left-Cerebral-White-Matter 4.5893 26.8066 0.0000 632.0000 632.0000 2 4 100 2700.0 Left-Lateral-Ventricle 0.1200 0.6077 0.0000 4.0000 4.0000 3 5 15 405.0 Left-Inf-Lat-Vent 2.8667 5.5789 0.0000 19.0000 19.0000 4 7 380 10260.0 Left-Cerebellum-White-Matter 0.0000 0.0000 0.0000 0.0000 0.0000 5 8 1606 43362.0 Left-Cerebellum-Cortex 0.0000 0.0000 0.0000 0.0000 0.0000 6 10 229 6183.0 Left-Thalamus-Proper 0.1004 0.4986 0.0000 5.0000 5.0000 7 11 117 3159.0 Left-Caudate 1.0855 2.5917 0.0000 21.0000 21.0000 8 12 206 5562.0 Left-Putamen 5.2913 12.7529 0.0000 152.0000 152.0000 9 13 54 1458.0 Left-Pallidum 1.8519 2.1754 0.0000 8.0000 8.0000 10 14 31 837.0 3rd-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 11 15 66 1782.0 4th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 12 16 558 15066.0 Brain-Stem 0.0000 0.0000 0.0000 0.0000 0.0000 13 17 116 3132.0 Left-Hippocampus 0.1983 1.1589 0.0000 9.0000 9.0000 14 18 67 1809.0 Left-Amygdala 0.8209 2.1315 0.0000 10.0000 10.0000 15 24 18 486.0 CSF 0.0000 0.0000 0.0000 0.0000 0.0000 16 26 27 729.0 Left-Accumbens-area 4.2593 6.8027 0.0000 23.0000 23.0000 17 28 130 3510.0 Left-VentralDC 0.0000 0.0000 0.0000 0.0000 0.0000 18 30 3 81.0 Left-vessel 9.6667 9.5044 0.0000 19.0000 19.0000 19 31 58 1566.0 Left-choroid-plexus 0.0345 0.2626 0.0000 2.0000 2.0000 20 41 7404 199908.0 Right-Cerebral-White-Matter 0.0011 0.0930 0.0000 8.0000 8.0000 21 43 96 2592.0 Right-Lateral-Ventricle 0.0312 0.3062 0.0000 3.0000 3.0000 22 44 6 162.0 Right-Inf-Lat-Vent 0.0000 0.0000 0.0000 0.0000 0.0000 23 46 366 9882.0 Right-Cerebellum-White-Matter 0.0000 0.0000 0.0000 0.0000 0.0000 24 47 1486 40122.0 Right-Cerebellum-Cortex 0.0000 0.0000 0.0000 0.0000 0.0000 25 49 249 6723.0 Right-Thalamus-Proper 0.0000 0.0000 0.0000 0.0000 0.0000 26 50 125 3375.0 Right-Caudate 0.0000 0.0000 0.0000 0.0000 0.0000 27 51 205 5535.0 Right-Putamen 0.0000 0.0000 0.0000 0.0000 0.0000 28 52 49 1323.0 Right-Pallidum 0.0000 0.0000 0.0000 0.0000 0.0000 29 53 120 3240.0 Right-Hippocampus 0.0000 0.0000 0.0000 0.0000 0.0000 30 54 59 1593.0 Right-Amygdala 0.0000 0.0000 0.0000 0.0000 0.0000 31 58 17 459.0 Right-Accumbens-area 0.0000 0.0000 0.0000 0.0000 0.0000 32 60 137 3699.0 Right-VentralDC 0.0000 0.0000 0.0000 0.0000 0.0000 33 63 68 1836.0 Right-choroid-plexus 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 127 3429.0 WM-hypointensities 0.2441 1.2390 0.0000 9.0000 9.0000 35 85 9 243.0 Optic-Chiasm 0.0000 0.0000 0.0000 0.0000 0.0000 36 251 26 702.0 CC_Posterior 0.0000 0.0000 0.0000 0.0000 0.0000 37 252 10 270.0 CC_Mid_Posterior 0.0000 0.0000 0.0000 0.0000 0.0000 38 253 13 351.0 CC_Central 0.0000 0.0000 0.0000 0.0000 0.0000 39 254 11 297.0 CC_Mid_Anterior 0.0000 0.0000 0.0000 0.0000 0.0000 40 255 25 675.0 CC_Anterior 4.3600 7.9837 0.0000 26.0000 26.0000 41 1000 52 1404.0 ctx-lh-unknown 0.7500 3.4235 0.0000 19.0000 19.0000 42 1001 113 3051.0 ctx-lh-bankssts 0.0000 0.0000 0.0000 0.0000 0.0000 43 1002 75 2025.0 ctx-lh-caudalanteriorcingulate 0.0133 0.1155 0.0000 1.0000 1.0000 44 1003 333 8991.0 ctx-lh-caudalmiddlefrontal 0.0000 0.0000 0.0000 0.0000 0.0000 45 1005 190 5130.0 ctx-lh-cuneus 0.0000 0.0000 0.0000 0.0000 0.0000 46 1006 59 1593.0 ctx-lh-entorhinal 0.1525 0.7384 0.0000 4.0000 4.0000 47 1007 385 10395.0 ctx-lh-fusiform 0.0961 1.0770 0.0000 20.0000 20.0000 48 1008 501 13527.0 ctx-lh-inferiorparietal 0.0000 0.0000 0.0000 0.0000 0.0000 49 1009 453 12231.0 ctx-lh-inferiortemporal 0.2450 2.3658 0.0000 43.0000 43.0000 50 1010 143 3861.0 ctx-lh-isthmuscingulate 0.0000 0.0000 0.0000 0.0000 0.0000 51 1011 561 15147.0 ctx-lh-lateraloccipital 0.0000 0.0000 0.0000 0.0000 0.0000 52 1012 347 9369.0 ctx-lh-lateralorbitofrontal 4.4438 11.7160 0.0000 147.0000 147.0000 53 1013 281 7587.0 ctx-lh-lingual 0.0000 0.0000 0.0000 0.0000 0.0000 54 1014 271 7317.0 ctx-lh-medialorbitofrontal 0.4133 1.9049 0.0000 15.0000 15.0000 55 1015 418 11286.0 ctx-lh-middletemporal 0.4330 2.0195 0.0000 17.0000 17.0000 56 1016 122 3294.0 ctx-lh-parahippocampal 0.0000 0.0000 0.0000 0.0000 0.0000 57 1017 192 5184.0 ctx-lh-paracentral 0.0000 0.0000 0.0000 0.0000 0.0000 58 1018 240 6480.0 ctx-lh-parsopercularis 0.0125 0.1113 0.0000 1.0000 1.0000 59 1019 97 2619.0 ctx-lh-parsorbitalis 0.0825 0.4715 0.0000 4.0000 4.0000 60 1020 96 2592.0 ctx-lh-parstriangularis 0.0000 0.0000 0.0000 0.0000 0.0000 61 1021 112 3024.0 ctx-lh-pericalcarine 0.0000 0.0000 0.0000 0.0000 0.0000 62 1022 443 11961.0 ctx-lh-postcentral 0.0000 0.0000 0.0000 0.0000 0.0000 63 1023 129 3483.0 ctx-lh-posteriorcingulate 0.0000 0.0000 0.0000 0.0000 0.0000 64 1024 548 14796.0 ctx-lh-precentral 0.0018 0.0427 0.0000 1.0000 1.0000 65 1025 435 11745.0 ctx-lh-precuneus 0.0000 0.0000 0.0000 0.0000 0.0000 66 1026 95 2565.0 ctx-lh-rostralanteriorcingulate 0.3684 1.0823 0.0000 5.0000 5.0000 67 1027 698 18846.0 ctx-lh-rostralmiddlefrontal 0.0659 0.5396 0.0000 7.0000 7.0000 68 1028 1075 29025.0 ctx-lh-superiorfrontal 0.0000 0.0000 0.0000 0.0000 0.0000 69 1029 601 16227.0 ctx-lh-superiorparietal 0.0000 0.0000 0.0000 0.0000 0.0000 70 1030 562 15174.0 ctx-lh-superiortemporal 6.0338 16.7834 0.0000 178.0000 178.0000 71 1031 640 17280.0 ctx-lh-supramarginal 0.0000 0.0000 0.0000 0.0000 0.0000 72 1032 62 1674.0 ctx-lh-frontalpole 0.2419 1.0817 0.0000 5.0000 5.0000 73 1033 98 2646.0 ctx-lh-temporalpole 13.8163 18.9483 0.0000 105.0000 105.0000 74 1034 56 1512.0 ctx-lh-transversetemporal 0.0000 0.0000 0.0000 0.0000 0.0000 75 1035 250 6750.0 ctx-lh-insula 12.7800 33.2338 0.0000 283.0000 283.0000 76 2000 37 999.0 ctx-rh-unknown 0.0000 0.0000 0.0000 0.0000 0.0000 77 2001 95 2565.0 ctx-rh-bankssts 0.0000 0.0000 0.0000 0.0000 0.0000 78 2002 83 2241.0 ctx-rh-caudalanteriorcingulate 0.0000 0.0000 0.0000 0.0000 0.0000 79 2003 276 7452.0 ctx-rh-caudalmiddlefrontal 0.0000 0.0000 0.0000 0.0000 0.0000 80 2005 142 3834.0 ctx-rh-cuneus 0.0000 0.0000 0.0000 0.0000 0.0000 81 2006 91 2457.0 ctx-rh-entorhinal 0.0000 0.0000 0.0000 0.0000 0.0000 82 2007 319 8613.0 ctx-rh-fusiform 0.0000 0.0000 0.0000 0.0000 0.0000 83 2008 691 18657.0 ctx-rh-inferiorparietal 0.0000 0.0000 0.0000 0.0000 0.0000 84 2009 433 11691.0 ctx-rh-inferiortemporal 0.0000 0.0000 0.0000 0.0000 0.0000 85 2010 123 3321.0 ctx-rh-isthmuscingulate 0.0000 0.0000 0.0000 0.0000 0.0000 86 2011 510 13770.0 ctx-rh-lateraloccipital 0.0000 0.0000 0.0000 0.0000 0.0000 87 2012 308 8316.0 ctx-rh-lateralorbitofrontal 0.0000 0.0000 0.0000 0.0000 0.0000 88 2013 308 8316.0 ctx-rh-lingual 0.0000 0.0000 0.0000 0.0000 0.0000 89 2014 255 6885.0 ctx-rh-medialorbitofrontal 0.0000 0.0000 0.0000 0.0000 0.0000 90 2015 525 14175.0 ctx-rh-middletemporal 0.0000 0.0000 0.0000 0.0000 0.0000 91 2016 77 2079.0 ctx-rh-parahippocampal 0.0000 0.0000 0.0000 0.0000 0.0000 92 2017 172 4644.0 ctx-rh-paracentral 0.0000 0.0000 0.0000 0.0000 0.0000 93 2018 208 5616.0 ctx-rh-parsopercularis 0.0000 0.0000 0.0000 0.0000 0.0000 94 2019 100 2700.0 ctx-rh-parsorbitalis 0.0000 0.0000 0.0000 0.0000 0.0000 95 2020 120 3240.0 ctx-rh-parstriangularis 0.0000 0.0000 0.0000 0.0000 0.0000 96 2021 93 2511.0 ctx-rh-pericalcarine 0.0000 0.0000 0.0000 0.0000 0.0000 97 2022 416 11232.0 ctx-rh-postcentral 0.0000 0.0000 0.0000 0.0000 0.0000 98 2023 159 4293.0 ctx-rh-posteriorcingulate 0.0000 0.0000 0.0000 0.0000 0.0000 99 2024 566 15282.0 ctx-rh-precentral 0.0000 0.0000 0.0000 0.0000 0.0000 100 2025 460 12420.0 ctx-rh-precuneus 0.0000 0.0000 0.0000 0.0000 0.0000 101 2026 85 2295.0 ctx-rh-rostralanteriorcingulate 0.0000 0.0000 0.0000 0.0000 0.0000 102 2027 756 20412.0 ctx-rh-rostralmiddlefrontal 0.0000 0.0000 0.0000 0.0000 0.0000 103 2028 1035 27945.0 ctx-rh-superiorfrontal 0.0000 0.0000 0.0000 0.0000 0.0000 104 2029 600 16200.0 ctx-rh-superiorparietal 0.0000 0.0000 0.0000 0.0000 0.0000 105 2030 536 14472.0 ctx-rh-superiortemporal 0.0000 0.0000 0.0000 0.0000 0.0000 106 2031 436 11772.0 ctx-rh-supramarginal 0.0000 0.0000 0.0000 0.0000 0.0000 107 2032 66 1782.0 ctx-rh-frontalpole 0.0000 0.0000 0.0000 0.0000 0.0000 108 2033 77 2079.0 ctx-rh-temporalpole 0.0000 0.0000 0.0000 0.0000 0.0000 109 2034 32 864.0 ctx-rh-transversetemporal 0.0000 0.0000 0.0000 0.0000 0.0000 110 2035 238 6426.0 ctx-rh-insula 0.0000 0.0000 0.0000 0.0000 0.0000
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Dr. Lucia Billeci, PhD Institute of Clinical Physiology (IFC) National Research Council (CNR) via Moruzzi 1, 56124, Pisa ITALY Tel: +39-0506213204 e-mail: lucia.bill...@ifc.cnr.it _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ Il giorno 18/ott/2013, alle ore 17:32, Anastasia Yendiki ha scritto:
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