Apologies: the full error message was: '*could not determine type of lh.Yeo2011_17Networks_N1000.annot*'
I tried your suggestion of removing the hemispheric designation in front of 'Yeo' and I'm getting the same error - - the same occurs if I remove the '.annot' at the end. *mri_surf2surf --srcsubject fsaverage \* *--srcsurfval Yeo2011_17Networks_N1000.annot \* *--trgsubject HS_001 --trgsurfval Yeo_17Network_native.annot --hemi lh* *ERROR: could not determine type of Yeo2011_17Networks_N1000* Thoughts? Cheers, Paul On Wed, Oct 23, 2013 at 3:49 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > > The full error msg is not in the subject line. My guess is that the > "lh." in front of "Yeo" in the srcsurfval is causing the problem > > > On 10/23/2013 03:17 PM, Paul Beach wrote: > > Hello FS experts, > > > > I'm attempting to transform the Yeo2011 annotations (lh & rh) from > > fsaverage to individual subjects so as to then sample the cortical > > maps to subject surfaces using mri_label2vol. However, I'm getting the > > error in the subject line when I put in the following commands: > > > > /mri_surf2surf --srcsubject fsaverage \/ > > /--srcsurfval lh.Yeo2011_17Networks_N1000.annot \/ > > /--trgsubject HS_001 --trgsurfval lh.Yeo_17Network_native.annot --hemi > lh/ > > > > I suspected that I have to put a src_type and trg_type in there, but I > > wasn't sure what type of types would be appropriate for use in > > mri_label2vol. For the latter command I was planning on utilizing > > something similar to a previous e-mailer's command (below): > > /mri_label2vol --annot lh.Yeo2011_17Networks_N1000.HS_001.annot \/ > > /--o outfile.nii.gz --hemi lh --subject HS_001 \/ > > /--temp $SUBJECTS_DIR/HS_001/mri/orig.mgz --identity/ > > > > Any suggestions for getting past this error? > > > > Thanks for your help, > > Paul > > -- > > Paul Beach > > DO/PhD candidate - Year VI > > Michigan State University > > - College of Osteopathic Medicine > > - Neuroscience Program > > - Bozoki Lab: Neurology/Radiology > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Paul Beach DO/PhD candidate - Year VI Michigan State University - College of Osteopathic Medicine - Neuroscience Program - Bozoki Lab: Neurology/Radiology
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