It gives the same results as the 5.3 version. The difference is that it does not require the ribbon.mgz file to be there in order to run. If you run recon-all from start to finish, then there is not a problem. If you run recon-all partially, then it may fail because it runs mri_segstats before the ribbon.mgz is created. doug
On 11/04/2013 09:30 AM, Satrajit Ghosh wrote: > hi doug, > > could you please highlight the changes - especially if there are any > critical bug fixes? and should we rerun the new mri_segstats on our > current 5.3 processed data? > > cheers, > > satra > > On Mon, Nov 4, 2013 at 9:26 AM, Douglas Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > I've put new versions here: > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/ > doug > > > > On 11/4/13 7:09 AM, Matura, Silke wrote: >> >> Dear Freesurfer community, >> >> we are doing cortical thickness analyses with Freesurfer version >> 5.3.0 in a Linux environment. In order to do the autorecon-1 and >> autorecon-2 steps, we need to download the new version of >> mri_segstats. >> >> Unfortunately, the link on the Freesurfer Release Notes Webpage >> does not work. Also, we could not find mri_segstats on the ftp >> server: >> >> /ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.centos6/ >> >> // >> >> Could you tell us, where we can download the new version of >> mri_segstats? >> >> Thank you, >> >> Silke >> >> Dr. Dipl.-Psych. Silke Matura >> >> Department of Psychiatry, Psychosomatic Medicine and Psychotherapy >> >> Laboratory of Neurophysiology and Neuroimaging >> >> Johann Wolfgang Goethe University of Frankfurt >> >> Heinrich-Hoffman-Str. 10 >> >> 60528 Frankfurt Germany >> >> Tel: 069 6301 7655 >> >> email: silke.mat...@kgu.de <mailto:silke.mat...@kgu.de> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
