To get them both in one file, run mri_surf2vol to get the left hemisphere. When you run it a 2nd time for the right hemisphere add "--merge vol.lh.nii". I think FSL has software to swap dimensions doug
On 11/04/2013 09:53 AM, Govindarajan, Koushik Athreya wrote: > > Hello Freesurfers, > > I am trying to use mri_surf2vol to convert my thickness > files into analyze/nifty format to use with a custom code. Is there a > way I can write all output files from mri_surf2vol in axial format? > Also, is there a way in FreeSurfer to combine these thickness files > from both hemispheres? > > Thanks in advance > > Koushik > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
