sorry, I don't know that code very well. Doug is probably the right one to
help you
Bruce
On Mon, 16 Dec 2013, Rujing Zha wrote:
Dear Bruce,
I did setup the "-run 015" not "013" in unpacksdcmdir as I told in previous
message. But it generated the "013" folder automatically after running
unpacksdcdir, which made me so confused.
As it created the "013" folder, I guess unpacksdcmdir didnot recognized
structure image correctly which was in the "15th" line of the scan.info.
Thanks Bruce.
All the best.
2013-12-16
____________________________________________________________________________
Rujing Zha
____________________________________________________________________________
发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu>
发送时间：2013-12-16 22:12
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人："Rujing Zha"<charujing...@163.com>
抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
but why are you giving recon-all the path to run 013 instead of 015? I
don't know the fsfast file structure, but your scan.info says that 013 is
?? ?an EPI fun and 015 is the mprage
On Sat,
14 Dec 2013, Rujing Zha wrote:
> Hi Bruce,
> It generated a 013 subfolder in after running this code "unpacksdcmdir
> -src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3danat mg
z
> 001.mgz". It is 15 that I can see the number of t1_mpr_ns_sag_iso_zhang
?? ?in
> the unpack.log.
> Then I ran "recon-all -i ../work/liujunhao/3danat/013/001.mgz -s liujunha
o",
> and it finished without error.
> "recon-all -s liujunhao -all" was run and ERROR would be displayed:
> ERROR: input(s) cannot have multiple frames!
> The recon-all.log unpack.log and scan.info were unloaded in the attachmen
t.
> Thanks.
> All the best.
>
> 2013-12-14
>
> _________________________________________________________________________
___
> Rujing Zha
>
>
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