Hi Rujing
you can use either our FTP site or our file drop. Info for this is at
http://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
and
https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
cheers
Bruce
On Mon, 16 Dec
2013, Rujing Zha wrote:
Hi Bruce,
Maybe 163 email has some problems. I will try my gmail to send you and Louis
my data. But I donot know whether your email can get attachment size 289M?
Thanks.
All the best.
2013-12-16
____________________________________________________________________________
Rujing Zha
____________________________________________________________________________
发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu>
发送时间：2013-12-16 22:37
主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
command-line ERROR
收件人："Rujing Zha"<charujing...@163.com>
抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
no, I didn't get it
On Mon, 16 Dec 2013, Rujing Zha wrote:
> Dear Bruce,
> Thanks Bruce. That's all right.
> I want to know if I e-mail to you my subject's data successfully. The
> subject's image had a incorrect segmentation in surfs after recon-all.
> Thanks in advance.
> All the best.
>
> 2013-12-16
>
> _________________________________________________________________________
___
> Rujing Zha
>
> _________________________________________________________________________
___
> 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu>
> 发送时间：2013-12-16 22:24
> 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
?? ?> command-line ERROR
> 收件人："Rujing Zha"<charujing...@163.com>
> 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
>
> sorry, I don't know that code very well. Doug is probably the right one t
o
?? ?
> help you
> Bruce
>
>
> On Mon, 16 Dec 2013, Rujing Zha wrote:
>
> > Dear Bruce,
> > I did setup the "-run 015" not "013" in unpacksdcmdir as I told in prev
io
> us
> > message. But it generated the "013" folder automatically after running
?? ?
> > unpacksdcdir, which made me so confused.
> > As it created the "013" folder, I guess unpacksdcmdir didnot recognized
> > structure image correctly which was in the "15th" line of the scan.info
.
?? ?> Thanks Bruce.
> > All the best.
> >
> > 2013-12-16
> >
> > _______________________________________________________________________
__
> ___
> > Rujing Zha
> >
> > _______________________________________________________________________
__
> ___
> > 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu>
> > 发送时间：2013-12-16 22:12
> > 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from th
e
?? ?> command-line ERROR
> > 收件人："Rujing Zha"<charujing...@163.com>
> > 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
> >
> > but why are you giving recon-all the path to run 013 instead of 015? I
?? ?
?? ?> don't know the fsfast file structure, but your scan.info says that 01
3 is
>
> ?? ?an EPI fun and 015 is the mprage
> >
> > On Sat,
> > 14 Dec 2013, Rujing Zha wrote:
> >
> > > Hi Bruce,
> > > It generated a 013 subfolder in after running this code "unpacksdcmdi
r
?? ?
> > > -src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3dana
t
?? ?mg
> > z
> > > 001.mgz". It is 15 that I can see the number of t1_mpr_ns_sag_iso_zh
an
> g
> ?? ?in
> > > the unpack.log.
> > > Then I ran "recon-all -i ../work/liujunhao/3danat/013/001.mgz -s liuj
un
> ha
> > o",
> > > and it finished without error.
> > > "recon-all -s liujunhao -all" was run and ERROR would be displayed:
?? ?
> > > ERROR: input(s) cannot have multiple frames!
> > > The recon-all.log unpack.log and scan.info were unloaded in the attac
hm
> en
> > t.
> > > Thanks.
> > > All the best.
> > >
> > > 2013-12-14
> > >
> > > _____________________________________________________________________
__
> __
> > ___
> > > Rujing Zha
> > >
> > >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to whom
?? ?it
> i
> > s
> > addressed. If you believe this e-mail was sent to you in error and the
?? ?e-
> ma
> > il
> > contains patient information, please contact the Partners Compliance He
lp
> Li
> > ne at
> > http://www.partners.org/complianceline . If the e-mail was sent to you
?? ?in
> e
> > rror
> > but does not contain patient information, please contact the sender and
p
> ro
> > perly
> > dispose of the e-mail.
> >
> >
> >
>
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it i
s
addressed. If you believe this e-mail was sent to you in error and the e-ma
il
contains patient information, please contact the Partners Compliance HelpLi
ne at
http://www.partners.org/complianceline . If the e-mail was sent to you in e
rror
but does not contain patient information, please contact the sender and pro
perly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
