no, I didn't get it On Mon, 16 Dec 2013, Rujing Zha wrote:
Dear Bruce, Thanks Bruce. That's all right. I want to know if I e-mail to you my subject's data successfully. The subject's image had a incorrect segmentation in surfs after recon-all. Thanks in advance. All the best. 2013-12-16 ____________________________________________________________________________ Rujing Zha ____________________________________________________________________________ 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu> 发送时间：2013-12-16 22:24 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人："Rujing Zha"<charujing...@163.com> 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu> sorry, I don't know that code very well. Doug is probably the right one to
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help you Bruce On Mon, 16 Dec 2013, Rujing Zha wrote: > Dear Bruce, > I did setup the "-run 015" not "013" in unpacksdcmdir as I told in previo us > message. But it generated the "013" folder automatically after running > unpacksdcdir, which made me so confused. > As it created the "013" folder, I guess unpacksdcmdir didnot recognized > structure image correctly which was in the "15th" line of the scan.info.
?? ?> Thanks Bruce.
> All the best. > > 2013-12-16 > > _________________________________________________________________________ ___ > Rujing Zha > > _________________________________________________________________________ ___ > 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu> > 发送时间：2013-12-16 22:12 > 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
?? ?> command-line ERROR
> 收件人："Rujing Zha"<charujing...@163.com> > 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu> > > but why are you giving recon-all the path to run 013 instead of 015? I
?? ?> don't know the fsfast file structure, but your scan.info says that 013 is
?? ?an EPI fun and 015 is the mprage > > On Sat, > 14 Dec 2013, Rujing Zha wrote: > > > Hi Bruce, > > It generated a 013 subfolder in after running this code "unpacksdcmdir
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> > -src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3danat
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> z > > 001.mgz". It is 15 that I can see the number of t1_mpr_ns_sag_iso_zhan g ?? ?in > > the unpack.log. > > Then I ran "recon-all -i ../work/liujunhao/3danat/013/001.mgz -s liujun ha > o", > > and it finished without error. > > "recon-all -s liujunhao -all" was run and ERROR would be displayed: > > ERROR: input(s) cannot have multiple frames! > > The recon-all.log unpack.log and scan.info were unloaded in the attachm en > t. > > Thanks. > > All the best. > > > > 2013-12-14 > > > > _______________________________________________________________________ __ > ___ > > Rujing Zha > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it i > s > addressed. If you believe this e-mail was sent to you in error and the e- ma > il > contains patient information, please contact the Partners Compliance Help Li > ne at > http://www.partners.org/complianceline . If the e-mail was sent to you in e > rror > but does not contain patient information, please contact the sender and p ro > perly > dispose of the e-mail. > > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
