FS does not natively uncompress jpeg compressed dicoms, however, you can
get and use the dcmdjpeg to do the decompression like this
dcmdjpeg +te dicomfile dicomfile
this will overwrite the dicom file, so make a backup. You will have to
run this for all of your dicoms
doug
On 02/04/2014 10:31 AM, Borzello, Mia wrote:
> Hi Freesurfers,
>
> I'm trying to convert CT dicoms to the MGZ format, but am getting an
> error saying "the pixel data cannot be loaded as it is JPEG
> compressed." I originally got dicoms without the extension .dcm, but
> then resaved them with the extension. Using either version didn't
> work. If you can shed some light on this, that would be great!
>
> Thanks,
> m
>
>
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