Hmm this didn't seem to work. I converted all 78 files. Is it okay to leave both versions of the dicoms (the ones with the .dcm extension and the original in the same folder)?
Thanks, m ________________________________________ From: [email protected] [[email protected]] on behalf of Douglas N Greve [[email protected]] Sent: Tuesday, February 04, 2014 11:21 AM To: [email protected] Subject: Re: [Freesurfer] dicom loading difficulty FS does not natively uncompress jpeg compressed dicoms, however, you can get and use the dcmdjpeg to do the decompression like this dcmdjpeg +te dicomfile dicomfile this will overwrite the dicom file, so make a backup. You will have to run this for all of your dicoms doug On 02/04/2014 10:31 AM, Borzello, Mia wrote: > Hi Freesurfers, > > I'm trying to convert CT dicoms to the MGZ format, but am getting an > error saying "the pixel data cannot be loaded as it is JPEG > compressed." I originally got dicoms without the extension .dcm, but > then resaved them with the extension. Using either version didn't > work. If you can shed some light on this, that would be great! > > Thanks, > m > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
