I would put the new ones into a different folder doug On 02/04/2014 02:35 PM, Borzello, Mia wrote: > Hmm this didn't seem to work. I converted all 78 files. Is it okay to leave > both versions of the dicoms (the ones with the .dcm extension and the > original in the same folder)? > > Thanks, > m > ________________________________________ > From: [email protected] > [[email protected]] on behalf of Douglas N Greve > [[email protected]] > Sent: Tuesday, February 04, 2014 11:21 AM > To: [email protected] > Subject: Re: [Freesurfer] dicom loading difficulty > > FS does not natively uncompress jpeg compressed dicoms, however, you can > get and use the dcmdjpeg to do the decompression like this > > dcmdjpeg +te dicomfile dicomfile > > this will overwrite the dicom file, so make a backup. You will have to > run this for all of your dicoms > > doug > > > On 02/04/2014 10:31 AM, Borzello, Mia wrote: >> Hi Freesurfers, >> >> I'm trying to convert CT dicoms to the MGZ format, but am getting an >> error saying "the pixel data cannot be loaded as it is JPEG >> compressed." I originally got dicoms without the extension .dcm, but >> then resaved them with the extension. Using either version didn't >> work. If you can shed some light on this, that would be great! >> >> Thanks, >> m >> >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [email protected] > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
