On 04/26/2014 02:54 PM, Kaveh Kohan wrote: > Dear All, > > This probably a newbie question, so I apologize if it is a naive one, > please bear with me. > > I have on value for each ROI on the surface of brain and one value for > each sub-cortical structures. Those ROIs and sub-cortical structures > correspond to freesurfer atlas. > > I have three questions: > > * I am not sure which freesurfer ATLAS these values correspond to? Is > there any way to tell from the name of structures? I have attached two > text files including the header of the tables. The aseg corresponds to the RB_all_2008-03-26.gca (see Fischl's 2002(?) Neuron paper), the other corresponds to the Desikan/Killiany atlas. > > * How can I visualize those values on the inflated brain? Something > like this: > > http://pysurfer.github.io/examples/plot_parc_values.html > > This package is a great but unfortunately very unstable (at least on > my laptop). It visualizes the brain but crashes immediately! No time > to save the results. Is there any MATLAB equivalent? > > * What is the best way to visualize the values for the subcortical > structures? We don't have a good way to get ROI values back into the volume or the surface. I'd probably do it in matlab doug > > Any comment is highly appreciated, > > Again, I am sorry if those are naive questions. > > Thanks, > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
