Hi Bruce, thank you. No, the stats have only 2 files and aparc and aseg are missing.
Elisabetta C. del Re, Ph.D. Instructor, Department of Psychiatry Harvard Medical School phone 617 9675569 mail [email protected] ________________________________________ From: [email protected] [[email protected]] On Behalf Of Bruce Fischl [[email protected]] Sent: Wednesday, April 30, 2014 3:39 PM To: Freesurfer support list Subject: Re: [Freesurfer] FS F.5 error Hi Elisabetta that is a warning that you can ignore, not an error. Did the output look ok? cheers Bruce On Wed, 30 Apr 2014, Elisabetta del Re wrote: > I ran a few cases through freesurfer5.3 last night and >> found that they all >> exited with the same error. This is the input that I >> used: >> > recon-all -s 01100.t1-realign-masked -i > /tmp/01100.t1-realign-masked.nii.gz -autorecon1 && cp > /projects/pnl/software/freesurfer5.3b/subjects/01100.t1-realign-masked/mri/T1.mgz > /projects/pnl/software/freesurfer5.3b/subjects/01122.t1-realign-masked/mri/brainmask.mgz > && recon-all -autorecon2 -subjid 01100.t1-realign-masked && recon-all > -autorecon3 -subjid 01100.t1-realign-masked && mv > /projects/pnl/software/freesurfer5.3b/subjects/01100.t1-realign-masked > 01100.freesurfer >> >> I've attached the recon-all.log file which shows the >> following error: >> >> IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF >> ROUTINE MCSRCH ERROR >> RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: >> FUNCTION OR GRADIENT ARE >> INCORRECT OR INCORRECT TOLERANCESoutof >> QuasiNewtonEMA: 007: -log(p) = >> -0.0 tol 0.000010 >> >> Thank you so much for any help, > best, >> >> Elisabetta del Re >> >> -- > Elisabetta del Re, > instructor, psychiatry, > Harvard Medical School > _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
