Thank you for the source details for dev. I just tried running freeview under the dev environment and I still received the same error message.
Any other ideas on what may be going on? Thank you! > Just run: > source /usr/local/freesurfer/nmr-dev-env > >> On May 6, 2014, at 10:34 AM, "jaco...@nmr.mgh.harvard.edu" >> <jaco...@nmr.mgh.harvard.edu> wrote: >> >> I have not tried dev version. Can you please let me know how I can load >> that? >> >>> Have you tried dev version? >>> >>> On May 6, 2014, at 10:15 AM, "jaco...@nmr.mgh.harvard.edu" >>> <jaco...@nmr.mgh.harvard.edu> wrote: >>> >>>> Hello All, >>>> >>>> Any idea why freeview fails to open? Below I have included the >>>> terminal >>>> output. >>>> >>>> I have checked my quota and I have plenty of available memory. I also >>>> tried running the 2 options (-start_in_debugger and >>>> -on_error_attach_debugger), but these were not recognized. I was next >>>> going to attempt to configure, but I fear I may do more damage if I >>>> start >>>> messing around with cmds that I do not understand. >>>> >>>> Thank you for the assistance! >>>> >>>> Jacob >>>> >>>> >>>> [purkinje:mri] (nmr-stable53-env) freeview >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, >>>> probably memory access out of range >>>> [0]PETSC ERROR: Try option -start_in_debugger or >>>> -on_error_attach_debugger >>>> [0]PETSC ERROR: or see >>>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC >>>> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple >>>> to >>>> find memory corruption errors >>>> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, >>>> and >>>> run >>>> [0]PETSC ERROR: to get more information on the crash. >>>> [0]PETSC ERROR: --------------------- Error Message >>>> ------------------------------------ >>>> [0]PETSC ERROR: Signal received! >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 13, Thu May 15 >>>> 17:29:26 >>>> CDT 2008 HG revision: 4466c6289a0922df26e20626fd4a0b4dd03c8124 >>>> [0]PETSC ERROR: See docs/changes/index.html for recent updates. >>>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. >>>> [0]PETSC ERROR: See docs/index.html for manual pages. >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: Unknown Name on a linux-gnu named >>>> purkinje.nmr.mgh.harvard.edu by jacobml Tue May 6 10:07:13 2014 >>>> [0]PETSC ERROR: Libraries linked from >>>> /autofs/space/lyon_006/pubsw/Linux2-2.3-x86_64/packages/petsc/2.3.3-p13/src/petsc-2.3.3-p13/lib/linux-gnu-c-opt >>>> [0]PETSC ERROR: Configure run at Tue Aug 10 15:01:59 2010 >>>> [0]PETSC ERROR: Configure options --with-debugging=no --with-cc=gcc >>>> --with-fc=g77 --download-f-blas-lapack=0 --download-mpich=1 >>>> --with-mpi=1 >>>> --with-x=0 --with-gnu-copyright-code=0 --with-shared=0 COPTFLAGS=-O3 >>>> CXXOPTFLAGS=-O3 FOPTFLAGS=-O3 >>>> [0]PETSC ERROR: >>>> ------------------------------------------------------------------------ >>>> [0]PETSC ERROR: User provided function() line 0 in unknown directory >>>> unknown file >>>> [unset]: aborting job: >>>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0 >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
