Hi Eileen Does adding control points to both temporal lobes fix it? Cheers Bruce
> On May 20, 2014, at 9:34 AM, "Daly, Eileen" <eileen.d...@kcl.ac.uk> wrote: > > Hello all, > > We are having trouble with the output after running recon-all -all -subjid > subjectx on our scans. > Registrations and skull striping look okay, but the white matter and pial > surface segmentations leave outportions of the anterior temporal lobe. > > After adding control points to the left temporal lobe, we then ran recon-all > -autorecon2 –cp -autorecon3 -subjid subjects. > > This made the the left lobe look better, but then we spotted new missing bits > on the right side > anterior temporal lobe. > > Any ideas on dealing with these missing temporal lobe issues? > > Thanks, > > Eileen Daly > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
