Hi Freesurfer,
I ran into the following error when running make_average_subject. The
following output is shown after make_average_surface is done.
/Volumes/fMRI/Scanner_Data
setenv SUBJECTS_DIR /Volumes/fMRI/Scanner_Data/
sdout /Volumes/fMRI/Scanner_Data/
mri_convert /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz
/Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh
--apply_transform
/Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm -oc 0
0 0
mri_convert /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz
/Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh
--apply_transform
/Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm -oc 0
0 0
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /Volumes/fMRI/Scanner_Data//P022/output/mri/orig.mgz...
TR=2200.00, TE=4.26, TI=1200.00, flip angle=9.00
i_ras = (-1, -1.16415e-10, 1.27329e-11)
j_ras = (1.0732e-10, -7.26432e-08, -1)
k_ras = (3.49246e-10, 1, -7.07805e-08)
INFO: Reading transformation from file
/Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm...
Reading transform with LTAreadEx()
INFO: Applying transformation from file
/Volumes/fMRI/Scanner_Data//P022/output/mri/transforms/talairach.xfm...
---------------------------------
INFO: Transform Matrix (linear_ras_to_ras)
1.182 0.047 -0.032 -0.505;
-0.064 1.202 0.238 18.683;
0.093 -0.236 1.271 -31.892;
0.000 0.000 0.000 1.000;
INFO: Transform dst volume info is not used (valid flag = 0).
INFO: LTA dst geometry information missing!
We assume that the dst volume passed is the
same as the dst for the transform.
INFO: LTA src geometry information missing!
We assume that the src volume passed is the
same as the src for the transform.
mghWrite(/Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh,
-1): could not open file
---------------------------------
Applying LTAtransformInterp (resample_type 1)
writing to
/Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh...
ERROR: failure writing
/Volumes/fMRI/Scanner_Data//average/tmp/make_average_vol-tmp-87329/orig-P022/output.mgh
/Volumes/fMRI/Scanner_Data
ERROR: mri_convert failed.
ERROR: make_average_volume
Thank you very much in advance for helping out! Best,
Qijing
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
