Hi FreeSurfers, I am very new to FreeSurfer and I'm having some issues uploading my first subject. I have a subject folder with 160 .dcm files and FreeSurfer cannot find the files.
Here is the script I used: recon-all -s 0000142 \ -i $SUBJECTS_DIR/0000142/000001.dcm I even tried to type out the full path instead of using $SUBJECTS_DIR variable and cd to where the files are stored and it still didn't work. Here is my output: ERROR: cannot find /home/mclem/freesurfer/testsubjects/0000142/000001.dcm Linux ubuntu 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10 19:11:08 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux recon-all -s 0000142 exited with ERRORS at Fri Jul 11 15:27:34 CDT 2014 Any thoughts on what I'm doing wrong? Thanks, Matthew Clem, M.Ed. Doctoral Student Clinical Psychology UT Southwestern Medical Center matthew.c...@utsouthwestern.edu<mailto:tabatha.mel...@utsouthwestern.edu> ________________________________ UT Southwestern Medical Center The future of medicine, today.
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