Ahh, that did the trick. Thanks!
On Fri, Jul 11, 2014 at 5:30 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Mark > > have you tried "conforming" the inputs (making them all 256^3, 1mm iso and > 8 bits/voxel)? > Bruce > > On Fri, 11 Jul 2014, Mark Plantz wrote: > > Hello freesurfers, >> I am running into some sort of memory allocation issue when running >> mri_ca_train. I am >> simply using an intensity volume and a segmentation volume to create a >> GCA atlas. I keep >> getting this "segmentation fault: 11", which is data allocation error. I >> have tried using all >> different environments and can't avoid it. The output is below: >> >> sh-3.2# mri_ca_train -T1 withSkull.mgz -seg seg_edited.mgz atlas_test >> /hearingbrain/Desktop/atlas_withSkull.gca >> reading T1 data from subject's mri/withSkull.mgz directory >> reading segmentation from subject's mri/seg_edited.mgz directory >> training on 1 subject and writing results to /Volumes/Macintosh >> HD/Users/hearingbrain/Desktop/atlas_withSkull.gca >> ************************************************************ >> *************** >> processing subject atlas_test, 1 of 1... >> reading input 0: /Applications/freesurfer/subjects/atlas_test/mri/ >> withSkull.mgz >> gca width modified from 256 to 181 >> gca height modified from 256 to 217 >> gca depth modified from 256 to 181 >> Segmentation fault: 11 >> >> >> Any ideas? >> >> -MP >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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